NOT on the list: the fast amino acids glutamate, GABA, glycine.
"Everything except the three amino acids can modulate." Amino acids are the wires; everyone else is the dimmer switch.
ACh is a fast excitatory transmitter at the neuromuscular junction (nicotinic), but in the brain it mostly acts as a neuromodulator (basal forebrain → cortex, largely muscarinic). Same molecule, different job depending on receptor and location.
Almost every psychiatric drug targets a neuromodulator system (SSRIs, SNRIs, MAOIs, antipsychotics, stimulants, antihistamines, cholinesterase inhibitors), which is why their clinical effects take time and are "mood/arousal" rather than "on/off".
| Family | Members | Made where? | Built from |
|---|---|---|---|
| Amino acids | Glutamate, aspartate, GABA, glycine | Presynaptic terminal | Glucose/TCA (Glu), Glu (GABA), serine (Gly) |
| Biogenic amines: catecholamines | Dopamine, norepinephrine (noradrenaline), epinephrine (adrenaline) | Terminal | Tyrosine |
| Biogenic amines: indoleamine | Serotonin (5-HT) | Terminal | Tryptophan |
| Biogenic amines: imidazoleamine | Histamine | Terminal | Histidine |
| Quaternary amine (own group) | Acetylcholine | Terminal | Choline + acetyl-CoA |
| Purines | ATP (not covered further) | Terminal | ADP |
| Neuropeptides | Opioids (β-endorphin, dynorphins, enkephalins), NPY, substance P, vasopressin, ACTH, orexin | Cell body → axonal transport | Amino acids (ribosomal protein synthesis) |
| Unconventional: lipid retrograde | Endocannabinoids: anandamide (AEA), 2-AG | Postsynaptic membrane, on demand | Membrane lipids |
Catechol-amines all start with Tyrosine: "The Dog Never Eats" → Tyrosine → DOPA/Dopamine → NE → Epi. The other two amines are named after their amino acid: Histidine → histamine; tryptophan → serotonin (5-hydroxy-tryptamine).
"Biogenic amine" is the umbrella: catecholamines are biogenic amines too. If a question asks for "a biogenic amine that is not a catecholamine", the answer is serotonin or histamine.
The sequence determines biological activity, but you do not need to memorize sequences.
Orexin (hypocretin) is a hypothalamic neuropeptide that stabilizes wakefulness; loss of orexin neurons → narcolepsy with cataplexy (↓ CSF hypocretin-1). Suvorexant (orexin receptor antagonist) treats insomnia.
Learn this skeleton once, then just fill in the blanks for each transmitter. Every drug question is "which step does it hit?"
| Transmitter | Precursor | Rate-limiting step | Vesicle loader | Termination | Receptors |
|---|---|---|---|---|---|
| ACh | Choline + acetyl-CoA | Choline availability (uptake); enzyme ChAT | VAChT | AChE in cleft → choline taken back up | Nicotinic (iono) + muscarinic (metabo) |
| Glutamate | Glutamine | Glutaminase | VGLUT | EAAT transporters (astrocytes > neurons) → glutamine | AMPA, NMDA, kainate (iono) + mGluR (metabo) |
| GABA | Glutamate | Glutamic acid decarboxylase (GAD) + B6 | VIAAT | GAT (astrocytes + presynaptic) → GABA/glutamine cycle | GABA-A (iono) + GABA-B (metabo) |
| Glycine | Serine | Serine hydroxymethyltransferase | VIAAT (same as GABA) | Glycine transporters (astrocytes + neurons) | Ionotropic only |
| Dopamine | Tyrosine | Tyrosine hydroxylase | VMAT | DAT; MAO → DOPAC, COMT → HVA | D1-like (Gs), D2-like (Gi): metabo only |
| Norepinephrine | Tyrosine (via DA) | Tyrosine hydroxylase | VMAT (DA in → NE made inside) | NET; MAO, COMT | α, β adrenergic: metabo only |
| Epinephrine | Tyrosine (via NE) | Tyrosine hydroxylase | VMAT | Reuptake; MAO, COMT | α, β adrenergic: metabo only |
| Serotonin | Tryptophan | Tryptophan-5-hydroxylase | VMAT | SERT; MAO (→ 5-HIAA) | 5-HT3 (iono) + all others (metabo) |
| Histamine | Histidine | Histidine decarboxylase | VMAT | MAO + histamine methyltransferase | H1–H4: metabo only |
| Neuropeptides | Amino acids (pre-propeptide) | Synthesis + transport from soma | Packaged in soma (dense-core) | Extracellular peptidases; no reuptake | Metabo only |
| Endocannabinoids | Membrane lipids | Enzymatic modification of lipids (Ca²⁺-triggered) | None | Hydrolysis (fatty acid amide hydrolase) | CB1, CB2: metabo only (Gi) |
The amines are made by "hydroxylate, then decarboxylate": Tyr hydroxylase → DOPA decarboxylase; Trp hydroxylase → 5-HTP decarboxylase (the same AADC). Histamine skips the hydroxylation: just decarboxylate. The first step is always the slow one.
Isoniazid causes B6 deficiency → ↓GABA → seizures (also sideroblastic anemia, peripheral neuropathy) → give pyridoxine. Pyridoxine-dependent epilepsy of infancy: seizures resistant to standard drugs, stopped by IV B6. B6 is also the cofactor for AADC (DOPA → DA, 5-HTP → 5-HT) and histidine decarboxylase.
The astrocyte returns glutamine, not glutamate and not GABA. Glutamine is non-neuroactive, so it can be shuttled safely through extracellular space.
"Frenzodiazepines ↑ FREquency, Barbidurates ↑ DURation." And B for Baclofen, B for GABA-B.
Zolpidem is not a benzodiazepine structurally but acts at the benzodiazepine site (BZ1/α1) and is also reversed by flumazenil.
Cofactor ladder "B-H-4, B-6, C, SAM": Tyr hydroxylase = BH4 → AADC = B6 → DBH = vit C → PNMT = SAM (methyl donor; PNMT puts the Methyl on).
| Drug | Step hit | Result |
|---|---|---|
| Cocaine | Blocks DAT, NET, SERT | ↑ synaptic DA/NE/5-HT → euphoria, vasoconstriction, MI, stroke |
| Amphetamine | Reverses DAT/NET (and VMAT) | Releases DA/NE → stimulant |
| MAOIs (phenelzine, tranylcypromine) | Block MAO-A/B | ↑ amines → antidepressant; + tyramine → hypertensive crisis |
| Selegiline, rasagiline | MAO-B (prefers DA) | ↑ brain DA → Parkinson |
| Entacapone, tolcapone | COMT | Prolong levodopa effect in Parkinson |
| Reserpine, tetrabenazine | VMAT | Deplete monoamines (depression, ↓ chorea) |
Only MAO sits on mitochondria; COMT is cytosolic and largely extraneuronal. Also: reuptake, not enzymatic breakdown, is the main way catecholamine action ends at the synapse (contrast ACh, where the enzyme AChE ends it).
Both: fever, altered mental status, autonomic instability. Serotonin syndrome = fast (hours), clonus, hyperreflexia, diarrhea, after a serotonergic combo. Neuroleptic malignant syndrome = slower (days), lead-pipe rigidity, ↓reflexes, ↑CK, after a D2 blocker (treat dantrolene/bromocriptine).
Histamine has no specific reuptake transporter in the in-house scheme; it is ended by enzymes (MAO + histamine N-methyltransferase). Also, it is not a catecholamine even though it shares VMAT and MAO.
1st-generation H1 blockers (diphenhydramine, doxylamine, meclizine, promethazine) → sedation + anticholinergic effects (dry mouth, urinary retention, delirium in elderly). Modafinil and pitolisant (H3 inverse agonist) promote wakefulness partly via histamine.
opium · morphine · meperidine · methadone · fentanyl (μ agonist) · codeine · oxycodone
| Receptor | Effects | Main endogenous ligand |
|---|---|---|
| μ1 | Euphoria, supraspinal analgesia, confusion, dizziness, nausea | β-endorphin |
| μ2 | Respiratory depression, CV and GI effects (constipation), miosis, urinary retention | |
| δ | Spinal analgesia, CV depression, ↓ brain/myocardial O₂ demand | Enkephalins |
| κ | Spinal analgesia, dysphoria, psychotomimetic effects, feedback inhibition of endorphins | Dynorphin |
"Mu = Morphine, Delta = Enkephalin (DEnk), Kappa = dynorphin (K-Dyn)." μ is the "big one": analgesia, euphoria and the dangerous respiratory depression.
AEA and 2-AG are the endocannabinoids (they are not precursors of something else). And THC is an exogenous phytocannabinoid, not an "exogenous endocannabinoid".
| Transmitter | Ionotropic? | Metabotropic? |
|---|---|---|
| Glutamate | Yes (excitatory): AMPA, NMDA, kainate | Yes (mGluR) |
| GABA | Yes (inhibitory): GABA-A | Yes: GABA-B |
| Glycine | Yes (inhibitory) — ONLY | No |
| Dopamine, NE, Epi | No | Yes — ONLY |
| Serotonin | Yes (excitatory): 5-HT3 | Yes (most) |
| Histamine | No | Yes — ONLY (H1–H4) |
| Acetylcholine | Yes (excitatory): nicotinic | Yes: muscarinic |
| Neuropeptides | No | Yes — ONLY |
| Endocannabinoids | No | Yes — ONLY (CB1, CB2) |
Ion carried by each ionotropic receptor: nicotinic ACh → Na⁺ · AMPA, kainate → Na⁺ · NMDA → Na⁺ and Ca²⁺ · 5-HT3 → Na⁺ · GABA-A, glycine → Cl⁻.
Metabotropic-only = "CHEN": Catecholamines, Histamine, Endocannabinoids, Neuropeptides. Ionotropic-only = glycine (the lone wolf). Everyone else (Glu, GABA, ACh, 5-HT) has both.
| Transmitter | Source nucleus | Projects to | Functions |
|---|---|---|---|
| Dopamine | Midbrain: substantia nigra pars compacta (Parkinson), ventral tegmental area (drug reward) | Widespread: striatum, cortex, amygdala, spinal cord, hippocampus | Movement, reward, motivation |
| Norepinephrine | Locus coeruleus (dorsal pons) | Nearly every part of brain and spinal cord | Sleep-wake, anxiety, depression, fear/stress; drug target for depression, anxiety, hypertension |
| Epinephrine | Low levels; lateral tegmental system and medulla | Hypothalamus, thalamus | Regulation of respiration and cardiac function |
| Serotonin | Raphe nuclei (pons and brainstem); ~80% of body 5-HT is made in the intestine | Extensive, throughout the brain and to spinal cord | Sleep/wake, feelings of well-being; SSRIs/MAOIs act here |
| Histamine | Hypothalamus (tuberomammillary nucleus) | Sparse but widespread, almost all brain + spinal cord | Arousal, attention, vestibular reactivity |
| ACh | Basal nucleus of Meynert (basal forebrain) and others | Cortex, hippocampus | Attention, memory (↓ in Alzheimer) |
| GABA | ~1/3 of all brain synapses; mostly local interneurons (cortex, brainstem, hippocampus, substantia nigra, striatum); projection neurons in striatum and cerebellum (Purkinje) | Local / basal ganglia / deep cerebellar nuclei | Inhibition; movement and motivation to move |
| Glycine | Brainstem and spinal cord (~½ of spinal inhibitory synapses) | Local | Spinal inhibition (Renshaw cells, reciprocal inhibition) |
| Endocannabinoid receptors | CB1: substantia nigra, caudate-putamen; also neocortex, cerebellum, hippocampus, hypothalamus, spinal cord · CB2: immune cells, microglia, astrocytes | — | Appetite, pain, mood, memory |
| Neuropeptide receptors | Widespread, synaptic + extrasynaptic | — | Feeding (NPY), anxiety, analgesia |
| NT (source) | Anxiety | Depression | Schizophrenia | Alzheimer | Huntington | Parkinson |
|---|---|---|---|---|---|---|
| ACh (basal nucleus of Meynert) | — | — | — | ↓ | ↓ | ↑ |
| Dopamine (VTA, SNc) | — | ↓ | ↑ | — | ↑ | ↓ |
| GABA (nucleus accumbens, widespread) | ↓ | — | — | — | ↓ | — |
| NE (locus coeruleus) | ↑ | ↓ | — | — | — | — |
| Serotonin (raphe) | ↓ | ↓ | (↑) | — | — | ↓ |
Boards phrase serotonin's source as the raphe and quote ~90% of body 5-HT in GI enterochromaffin cells (in-house figure ~80%).
"Raphe makes you happy, the Locus makes you Lively, the Nigra makes you move, Meynert makes you remember." And blue = coeruleus (Latin "sky blue"; neuromelanin pigment) → NE; black = nigra → DA.
The locus coeruleus (pons, floor of 4th ventricle) is the NE source; the raphe (midline) is the 5-HT source. Both are in the brainstem and often appear side by side as answer choices. Also: Parkinson's first-line tremor drugs in young patients are anticholinergics because DA loss leaves ACh relatively ↑.
| Pathway | Origin → target | When altered / blocked by D2 antagonist |
|---|---|---|
| Mesolimbic | VTA → nucleus accumbens / limbic | ↑ activity = positive symptoms; blockade = antipsychotic effect |
| Mesocortical | VTA → prefrontal cortex | ↓ activity = negative symptoms |
| Nigrostriatal | SNc → dorsal striatum (caudate, putamen) | ↓ = parkinsonism / extrapyramidal symptoms |
| Tuberoinfundibular | Hypothalamus (arcuate) → median eminence/pituitary | ↓ = ↑ prolactin (galactorrhea, amenorrhea, ↓libido) |
MPTP (contaminant of synthetic meperidine analogs) → converted by MAO-B in astrocytes to MPP⁺ → taken up by DAT → kills SNc dopamine neurons → acute parkinsonism. MAO-B inhibitors (selegiline) block the conversion.
| Transmitter | Predominant effect | Why |
|---|---|---|
| Glutamate | Excitatory | Cation channels (Na⁺, Ca²⁺) |
| GABA | Inhibitory | Cl⁻ in (A), K⁺ out + ↓Ca²⁺ (B) |
| Glycine | Inhibitory | Cl⁻ in |
| ACh (nicotinic) · 5-HT via 5-HT3 | Excitatory | Non-selective cation channels |
| Opioids | Inhibitory | ↑K⁺ conductance, ↓Ca²⁺ channels |
| Endocannabinoids | Inhibitory on the presynaptic target (often net disinhibition) | Gi CB1 → ↓ release |
| DA, NE, Epi, histamine, 5-HT (metabotropic), ACh (muscarinic), peptides | Modulatory: excitatory or inhibitory | Depends on receptor subtype / G protein |
Basal ganglia: dopamine acts on D1 (direct pathway, "go") = excitatory and D2 (indirect pathway, "stop") = inhibitory; both actions promote movement, so DA loss (Parkinson) → bradykinesia. Antiepileptics work by either ↑ inhibition (benzos, phenobarbital, valproate, vigabatrin, tiagabine) or ↓ excitation (Na⁺/Ca²⁺ blockers, perampanel AMPA antagonist).
Blocking an inhibitory system produces excitation (seizures, spasms): strychnine, picrotoxin, tetanus toxin, flumazenil in a benzodiazepine-dependent patient. Don't pick "excitatory transmitter" just because the clinical picture is excitation.
"Chloride Calms." Any receptor that lets Cl⁻ in (GABA-A, glycine) calms the neuron; "Sodium Stirs" (Glu, nicotinic, 5-HT3).
| Feature | Small-molecule transmitter | Neuropeptide |
|---|---|---|
| Site of synthesis | Presynaptic terminal cytoplasm (enzymes shipped down, precursor taken up locally) | Cell body (RER/Golgi) as pre-propeptide; processed by proteolysis |
| Packaging into vesicles | Small clear vesicles, filled at the terminal by transporters; fast local recycling | Large dense-core vesicles, filled in the soma, axonal transport; slow recycling |
| Stimulus for release | Single AP; local Ca²⁺ at the active zone | High-frequency train of APs → diffuse Ca²⁺ rise; release away from active zone (sides of the bouton) |
| Diffusion | Ultra-short (nanometers), point-to-point | Large area (micrometers): volume transmission |
| Receptors | Ionotropic and/or metabotropic; need high concentration | Metabotropic only; very high affinity → low concentrations suffice |
| Termination | Reuptake and/or enzymes; transmitter recycled | Extracellular endo/exopeptidases; no reuptake → resynthesis in soma |
| Speed | Fast (ms) | Slow, long-lasting (s–min) |
"SPDT" → "Some Peptides Don't Turn over": Site (soma), Packaging (dense-core), Diffusion (wide), Termination (peptidases), and they need a strong Train to be released. Small molecules = local factory with recycling; peptides = central factory with one-way shipping.
Catecholamines can also be stored in dense-core vesicles (small or large), so "dense-core" alone does not prove "peptide". The decisive peptide clues are soma synthesis + axonal transport and no reuptake.
Because POMC is cleaved into ACTH and MSH, high ACTH states (Addison disease, ectopic ACTH) cause hyperpigmentation. Neuropeptides with board relevance: substance P (pain; aprepitant = NK1 antagonist anti-emetic), NPY and orexin (feeding/wakefulness), vasopressin/oxytocin (supraoptic and paraventricular nuclei → posterior pituitary).
1A 34-year-old man started on treatment for latent tuberculosis 3 months ago is brought to the emergency department after a generalized tonic-clonic seizure. He has no history of epilepsy. He also reports numbness of both feet. Reduced activity of which enzyme most directly explains the seizure?
2A 4-year-old boy is brought in after eating pellets from a garage shelf. He has painful generalized muscle spasms triggered by noise, arching of the back and trismus, but is alert and responds appropriately between spasms. The toxin most likely acts by which mechanism?
3A 52-year-old woman treated for refractory depression with an older antidepressant attends a wine-tasting party. Within an hour she develops a severe occipital headache, palpitations and BP of 210/124 mm Hg. Inhibition of which enzyme is responsible?
4A 66-year-old man with resting tremor and bradykinesia is prescribed levodopa combined with a second drug that does not cross the blood-brain barrier. The second drug allows a lower levodopa dose and reduces nausea. What is its target?
5A researcher records from a small cluster of pigmented neurons in the dorsal pons beneath the floor of the fourth ventricle. Firing rises sharply when the animal is startled or stressed and falls almost to zero in REM sleep. These neurons release which transmitter?
6A 30-year-old woman takes an over-the-counter antihistamine for seasonal allergies and becomes very drowsy at work. A colleague's newer antihistamine does not cause sleepiness. The sedation from the first drug is best explained by blockade of receptors whose transmitter originates in which structure?
7A patient receiving cisplatin is given ondansetron for vomiting. The receptor targeted by this drug differs from all other receptors for the same transmitter in which way?
8In hippocampal tissue, strong depolarization of a pyramidal neuron transiently reduces the inhibitory postsynaptic currents it receives. The effect is abolished by a CB1 antagonist. Which statement best describes the messenger?
9A hypothalamic neuron contains both glutamate and neuropeptide Y. At a firing rate of 2 Hz, only glutamate is detected in the extracellular space; at 40 Hz, both are detected. What best explains this?
10A 58-year-old man has episodic facial flushing, watery diarrhea and wheezing. CT shows multiple liver masses. He also has a scaly rash on sun-exposed skin. Which urine test best supports the diagnosis?
11A 76-year-old woman has 3 years of progressive short-term memory loss, getting lost in familiar places and difficulty with finances. Her physician starts donepezil. Degeneration of which structure underlies the transmitter deficit this drug addresses?
12Bath-applying transmitter X to a neuron produces no response for ~200 ms, then a slow hyperpolarization lasting several seconds. The response is abolished by pertussis toxin, and no ionotropic receptor for X has ever been found. X is most likely which of the following?
13A 2-year-old immigrant child with no newborn screening has intellectual disability, eczema, very fair hair and a musty body odor. Which change in brain neurochemistry is expected?