HoyaDocs · Block 5 HNSS · Embryology · Updated Oct 1, 2026 · Revision 1.3

HNSS18 · 3 learning objectives

Embryology of the Eye & Ear

LO 1

Describe the embryologic origins of the major structures of the eye and ear

Key questions

  1. Q1What do the inner and outer layers of the optic cup form?
    Inner layer: neural retina. Outer layer: retinal pigment epithelium.
  2. Q2Which eye structures come from surface ectoderm?
    The lens and the corneal epithelium.
  3. Q3Which eye structures come from neural crest?
    Corneal stroma and endothelium, iris stroma, and the ciliary muscle and stroma.
  4. Q4Which eye muscles come from neuroectoderm rather than mesoderm?
    The sphincter and dilator pupillae (from the anterior optic cup).
  5. Q5What are the origins of the inner, middle and external ear?
    Inner: otic placode (surface ectoderm). Middle: pouch 1 + arches 1 and 2. External: cleft 1 + arches 1 and 2.
  6. Q6Which structure is built from pouch 1, cleft 1 and the mesenchyme between them?
    The tympanic membrane.
  7. Q7Where does the bony labyrinth come from, vs the membranous labyrinth?
    Bony: mesenchyme around the otic vesicle forms a cartilaginous capsule that ossifies. Membranous: the otic vesicle itself.

Eye: neuroectoderm (optic cup) makes retina, RPE, iris/ciliary epithelium and iris muscles; surface ectoderm makes lens and corneal epithelium; neural crest makes the stroma. Ear: inner = otic placode; middle = pouch 1 + arches 1–2; external = cleft 1 + arches 1–2.

Eye

StructureOrigin
Neural retinaInner layer of optic cup (neuroectoderm)
Retinal pigment epitheliumOuter layer of optic cup
Optic nerveOptic stalk + retinal ganglion cell axons
LensSurface ectoderm (lens placode)
Corneal epitheliumSurface ectoderm
Corneal stroma + endotheliumNeural crest
Iris epithelium + sphincter/dilator pupillaeAnterior optic cup (neuroectoderm)
Iris stromaNeural crest
Ciliary epitheliumOptic cup
Ciliary muscle + stromaNeural crest mesenchyme
Hyaloid arteryRuns in the choroid fissure

Ear

StructureOrigin
Membranous labyrinthOtic placode (surface ectoderm) → otic vesicle
Bony labyrinthMesenchyme around the otic vesicle → cartilaginous capsule → ossifies
CN VIII gangliaNeuroblasts from otic epithelium
Tympanic cavity + auditory tubePouch 1 (tubotympanic recess)
Malleus + incusArch 1 (Meckel's)
StapesArch 2 (Reichert's)
Tympanic membranePouch 1 + cleft 1 + mesenchyme between
External auditory meatusCleft 1
Auricle6 auricular hillocks: 1–3 arch 1, 4–6 arch 2. Hillock 1 → tragus; hillock 6 → antitragus. The lobule is not from hillocks. Pinna = elastic cartilage
HY · Step 1
  • Sphincter and dilator pupillae come from neuroectoderm, the classic exception to "muscles come from mesoderm."
  • The tympanic membrane is the one structure with all three germ layers: ectoderm (cleft 1), mesoderm (middle), endoderm (pouch 1).
  • Hyaloid artery → its proximal part persists as the central retinal artery.
LO 2

Explain the major developmental steps in the formation of the eye and the inner, middle, and external ear

Key questions

  1. Q8Where do the eyes begin, and which gene marks the eye fields?
    In the anterior neural plate (prosencephalon/diencephalon); the eye fields express PAX6.
  2. Q9What induces the lens placode, and what are the steps that follow?
    The optic vesicle induces surface ectoderm. Lens placode → lens pit → lens vesicle, which pinches off; meanwhile the optic vesicle invaginates into the optic cup.
  3. Q10What does the lens vesicle induce next?
    Corneal development.
  4. Q11What runs through the choroid fissure?
    The hyaloid artery.
  5. Q12When do the eyelids fuse, and when do they reopen?
    They fuse at the start of the second trimester and reopen at the start of the third.
  6. Q13What is the sequence for the inner ear, and where is the otic pit?
    Otic placode → otic pit (dorsal to cleft 2) → otic vesicle, which pinches off from the surface.
  7. Q14Where do the CN VIII ganglia come from?
    Neuroblasts delaminate from the otic epithelium to form the statoacoustic ganglion, which splits into the vestibular and spiral ganglia.
  8. Q15What do the utricular and saccular portions of the otic vesicle form?
    Utricular: utricle + semicircular ducts. Saccular: saccule + cochlear duct (→ Organ of Corti).
  9. Q16How does the auricle form, and why do the ears move up?
    From 6 auricular hillocks (1–3 arch 1, 4–6 arch 2). The ears start caudal to the jaw, and jaw growth shifts them up and vertical.
  10. Q17What is the meatal plug, and when does it clear?
    An epithelial plug filling the external canal. It breaks down around month 7, opening the canal to the eardrum.

Eye: the optic vesicle induces the lens placode, and each shapes the other into optic cup + lens vesicle. Inner ear: otic placode → pit → vesicle, which splits into utricular and saccular parts.

Eye
Approx. ageStep
~Day 17Eye fields in anterior neural plate (prosencephalon), PAX6-expressing
~Day 21–24Forebrain grows forward; eye field cells invaginate → optic grooves
~Day 25–28Optic grooves → optic vesicles + optic stalks
~Day 28–33Optic vesicle contacts surface ectoderm → induces lens placode (thickening)
~Day 36Reciprocal induction: optic vesicle invaginates → bilayered optic cup; lens placode → lens pit → lens vesicle pinches off. Lens vesicle then induces the cornea
~Wk 6Invagination creates the choroid fissure inferiorly; hyaloid artery runs through it. Fissure then closes
~Wk 7Posterior lens fibers elongate and fill the lens cavity; lens grows at its equator (PAX6, SOX2, MAF). Cornea differentiates. Neural retina thickens, pigmented layer thins
~Wk 7–8Anterior chamber forms; pupillary membrane normally regresses before birth
~Wk 8–9Iris grows from anterior rim of optic cup; eyelids begin forming at the end of the embryonic period
~Wk 10 → 3rd triEyelids fuse (start of 2nd trimester) and reopen (start of 3rd trimester)
~Wk 15Two optic-cup layers fold → ciliary processes
Optic vesicleinduces →lens placode→lens pit→lens vesicleinduces →cornea
Ear

Inner

  • ~Day 22: otic placode (surface ectoderm)
  • ~Day 26–28: otic pit, dorsal to cleft 2
  • ~Day 29: otic vesicle pinches off
  • Surrounding mesenchyme → cartilaginous capsule → bony labyrinth; the otic vesicle itself becomes the membranous labyrinth
  • ~Day 30: neuroblasts delaminate → statoacoustic ganglion → vestibular + spiral ganglia (CN VIII)
  • ~Day 36: vesicle divides
    • Dorsal → endolymphatic duct + sac
    • Utricular → utricle + semicircular ducts
    • Saccular → saccule + cochlear duct (~wk 9) → Organ of Corti

Middle

  • Pouch 1 → tubotympanic recess → tympanic cavity + auditory tube
  • Arch 1 → malleus, incus; arch 2 → stapes
  • The recess keeps expanding late in gestation until the tympanic cavity surrounds the ossicles

External

  • Wk 5–6: 6 auricular hillocks around cleft 1
  • Ears start caudal to the lower jaw; jaw growth moves them up and vertical
  • Cleft 1 → external auditory meatus
  • A meatal plug of epithelial cells fills the canal, then breaks down around month 7, opening the canal to the tympanic membrane
Memory hook

Utricle → semicircular (rotation + linear); Saccule → Sound (cochlear duct).

LO 3

Recognize selected developmental abnormalities and explain their embryologic basis

Key questions

  1. Q18What causes cyclopia?
    Loss of SHH from the ventral midline, so PAX6 isn't repressed there and the two eye fields merge.
  2. Q19A child has a keyhole-shaped defect at the bottom of the iris. What failed to happen?
    The choroid fissure failed to close → coloboma.
  3. Q20What does a persistent pupillary membrane risk?
    If it blocks the visual axis, deprivation amblyopia.
  4. Q21Which first-trimester drugs are linked to external ear anomalies?
    Streptomycin, salicylates and thalidomide.
  5. Q22Which genes are linked to hair-cell loss, and what does each affect?
    POU4F3: hair cell degeneration. Connexin 26: supporting-cell gap junctions. c-Kit: stria vascularis.
  6. Q23Why can ears end up low-set?
    Abnormal auricular hillock (arch 1/2) development, or failure of jaw growth to shift the ears upward. Often a marker of an arch or chromosomal syndrome.

The lecture's three: cyclopia (no SHH → eye fields don't separate), coloboma (choroid fissure doesn't close), persistent pupillary membrane (fails to regress).

AbnormalityEmbryologic basisConsequence
CyclopiaNo SHH from the ventral midline → PAX6 isn't repressed in the midline → the two eye fields convergeSingle midline eye; forebrain deficient
ColobomaChoroid fissure fails to closeInferior "keyhole" gap in iris (can affect retina, choroid, optic nerve)
Persistent pupillary membranePupillary membrane fails to regress before birthStrands across the pupil. If it blocks the visual axis → deprivation amblyopia
Drug-induced ear anomaliesExternal ear is very sensitive to first-trimester drug exposure (streptomycin, salicylates, thalidomide)Pharyngeal and external ear malformations
Waardenburg syndromeAutosomal dominant; neural crest (PAX3) defect affecting pigment cellsCongenital deafness + pigment abnormalities (white forelock)
Genetic hair-cell lossPOU4F3 (hair cell degeneration), connexin 26 (supporting-cell gap junctions), c-Kit (stria vascularis)Sensorineural hearing loss
Low-set / malformed earsAuricular hillocks (arches 1–2) or failed upward shift with jaw growthMarker of arch or chromosomal syndromes
HY · Step 1 add-ons (not in lecture)
  • Cyclopia sits on the holoprosencephaly spectrum (SHH mutation, trisomy 13, maternal diabetes, alcohol).
  • Aniridia = PAX6 mutation; part of WAGR (Wilms tumor, Aniridia, GU anomalies, intellectual disability, 11p13).
  • Congenital rubella: cataracts, sensorineural deafness, PDA. Congenital CMV: most common infectious cause of hearing loss.
  • Lower-eyelid coloboma is a separate thing: it's a Treacher Collins sign (arch 1 NC), not a choroid fissure defect.
Extra

Ear structure, histology and pathology

Key questions

  1. Q24Which fluid fills the membranous labyrinth, and what is its key ion?
    Endolymph, high in K⁺ (made by the stria vascularis). Perilymph, between the membranous and bony labyrinths, is high in Na⁺.
  2. Q25Which cochlear compartment holds the Organ of Corti?
    The scala media (cochlear duct), filled with endolymph.
  3. Q26Inner vs outer hair cells: which transmits and which amplifies?
    Inner hair cells transmit to the spiral ganglion; outer hair cells amplify.
  4. Q27Maculae vs cristae ampullares: what does each sense?
    Maculae (utricle, saccule): linear acceleration and gravity, using otoliths. Cristae (semicircular canals): rotation, using the cupula.
  5. Q28What does each middle-ear muscle dampen?
    Stapedius (VII): loud sounds. Tensor tympani (V3): the sound of chewing.
  6. Q29Where is the cone of light in each ear?
    5 o'clock in the right ear, 7 o'clock in the left.
  7. Q30Which disease fixes the stapes, and what kind of hearing loss results?
    Otosclerosis; conductive hearing loss.
  8. Q31What causes Ménière disease vs BPPV?
    Ménière: excess endolymph (hydrops). BPPV: otoliths dislodged into a semicircular canal.

This material was covered in last year's version of this lecture (Embryology & Histology of the Ear) but isn't part of this year's lecture. Treat it as lower priority for this lecture. Ear histology is also covered in the Histology of the Eye & Ear lecture.

The inner ear has two fluids: endolymph inside the membranous labyrinth (high K⁺) and perilymph between the membranous and bony labyrinths (high Na⁺). Hair cells bend → channels open → K⁺ enters → depolarization → CN VIII.

Cochlea (hearing)

  • Scala vestibuli: perilymph
  • Scala media (cochlear duct): endolymph, made by the stria vascularis; holds the Organ of Corti
  • Scala tympani: perilymph
  • Organ of Corti: rows of hair cells (1 inner, 3 outer) with stereocilia in the tectorial membrane. Inner hair cells send the signal to the spiral ganglion; outer hair cells amplify it

Vestibular (balance)

  • Maculae of utricle and saccule: linear acceleration and gravity. Stereocilia sit in an otolithic membrane loaded with otoliths (calcium carbonate)
  • Cristae ampullares in the semicircular canal ampullae: rotation. Hair cells project into the cupula; endolymph lags behind during head turns and pushes on it
  • Bending toward the kinocilium → tip links open channels → K⁺ enters → depolarization → Ca²⁺ entry → neurotransmitter → CN VIII
External auditory meatus→tympanic membrane→malleus → incus → stapes→oval window→scala vestibuli→scala media (hair cells, by frequency)→scala tympani→round window

Middle ear

  • Stapedius (CN VII): smallest muscle in the body; dampens loud sound
  • Tensor tympani (V3): dampens the sound of chewing
  • Eustachian tube: middle ear to nasopharynx; equalizes pressure across the eardrum
  • Chorda tympani (VII) passes between the malleus and incus → taste, anterior 2/3 of tongue. CN VII compression in the middle ear → facial palsy ± taste loss

External ear and eardrum

  • Pinna: elastic cartilage + connective tissue
  • Canal: hair follicles, sebaceous glands (sebum), ceruminous glands (cerumen/wax)
  • Tympanic membrane: small pars flaccida at the top, larger pars tensa below (most perforations)
  • Handle of the malleus attaches centrally; the umbo makes the cone of light: 5 o'clock in the right ear, 7 o'clock in the left
DiseaseRegionMechanism / presentationTreatment
Ménière diseaseInner↑ Endolymph (endolymphatic hydrops) → membranes rupture and fluids mix → episodic vertigo, nausea, tinnitus, hearing lossLow-salt diet, diuretics, physical therapy, labyrinthectomy
BPPVInnerOtoliths from the utricle/saccule slip into a semicircular canal → brief vertigo after head movementCanalith repositioning (head maneuvers)
Hair-cell lossCochleaGenetic (POU4F3, connexin 26, c-Kit), stereocilia bundle defects, loud noiseHearing aids; cochlear implant (needs an intact auditory nerve)
Otitis mediaMiddleBacteria climb the eustachian tube from the nasopharynxAntibiotics
CholesteatomaMiddleSquamous epithelium ("skin") grows through the eardrum into the middle ear; can erode boneSurgical removal
OtosclerosisMiddleBony overgrowth fixes the stapes → conductive hearing loss; hereditary or hormonal (after pregnancy)Stapedectomy with prosthesis (~9/10 restore hearing)
Auricular hematoma ("wrestler's ear")ExternalBlunt trauma → blood under the perichondrium → cartilage overgrowthDrain early (deformity likely after ~7 days)
Perichondritis / chondritisExternalUsually bacterial infection of perichondrium and cartilageAntibiotics
Exostoses ("surfer's ear")ExternalDense bony growths in the canal from repeated cold waterUsually none, unless the canal is blocked
Cerumen impactionExternalWax builds up; can block the canal and raise infection riskAvoid pushing it deeper
Otitis externaExternalOuter ear infection; can perforate the eardrumDepends on cause
HY · Step 1
  • Conductive loss (otosclerosis, otitis media, cerumen): Weber lateralizes to the bad ear; bone > air (Rinne abnormal). Sensorineural loss (hair cells, Ménière): Weber lateralizes away; air > bone.
  • Ménière triad: episodic vertigo + tinnitus + sensorineural hearing loss (with ear fullness).
  • Cholesteatoma: keratin-filled squamous debris behind the eardrum; painless otorrhea, conductive loss.
  • Ototoxic drugs: aminoglycosides (streptomycin, gentamicin), cisplatin, loop diuretics, high-dose salicylates.

Application questions

1. A mutation abolishes signaling from the optic vesicle to the overlying ectoderm. Which structure fails to form first?

  1. Neural retina
  2. Lens
  3. Retinal pigment epithelium
  4. Optic stalk
Answer
B. The optic vesicle induces surface ectoderm to form the lens placode. Without the lens vesicle, the cornea is affected next.

2. Which structure forms from the same embryonic tissue as the neural retina?

  1. Corneal stroma
  2. Lens fibers
  3. Sphincter pupillae muscle
  4. Ciliary muscle
Answer
C. Sphincter and dilator pupillae come from the anterior optic cup (neuroectoderm), like the retina. Corneal stroma and ciliary muscle are neural crest; lens is surface ectoderm.

Each objective opens with the one-line answer. Yellow boxes are high-yield Step 1 add-ons and may go beyond the lecture.